SNP Profiles of GU 136 /H   View Data

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 Key

 1234567891011121314
_Input profile
TTAATTCCGGTTAAAACCGGGGGGCCAA
1._RUQ_221
_______AA___GG__
2._RUQ_221
_______AA___GG__
3._GU_136_/H
_______AA___GG__
4._GU_136_/H
_______AA___GG__
5._GU_136_/H
_______AA___GG__
6._GU_136_/H
_______AA___GG__
7._GU_136_/H
_______AA___GG__
8._GU_136_/H
_______AA___GG__
9._GU_136_/H
_______AA___GG__
10._GU_136_/H
_______AA___GG__
11._GU_136_/H
_______AA___GG__
12._GU_136_/H
_______AA___GG__
13._GU_136_/H
_______AA___GG__
14._GU_136_/H
_______AA___GG__
15._GU_136_/H
_______AA___GG__
16._GU_136_/H
_______AA___GG__
17._GU_136_/H
_______AA___GG__
18._GC-03-019-2-08
_______AA___GG__
19._GC-03-019-2-08
_______AA___GG__
20._GC-03-019-2-08
_______AA___GG__
21._GC-03-019-2-08
_______AA___GG__
22._GC-03-019-2-08
_______AA___GG__
23._GC-03-019-2-08
_______AA___GG__
24._GC-03-019-2-08
_______AA___GG__
25._GC-03-019-2-08
_______AA___GG__
26._GC-03-019-2-08
_______AA___GG__
27._GC-03-019-2-08
_______AA___GG__
28._GC-03-019-2-08
_______AA___GG__
29._GC-03-019-2-08
_______AA___GG__
30._GC-03-019-2-08
_______AA___GG__
31._GC-03-019-2-08
_______AA___GG__
32._GC-03-019-2-08
_______AA___GG__
33._GC-03-19-2-8
_______AA___GG__
 1516171819202122232425262728
_Input profile
GGAATTAACCAAGGCCTTCCCCTTGGCC
1._RUQ_221
GG____AA_CC_CCCC___
2._RUQ_221
_____AA_CC_CC____
3._GU_136_/H
_____AA_CC_CC____
4._GU_136_/H
_____AA_CC_CC____
5._GU_136_/H
_____AA_CC_CC____
6._GU_136_/H
_____AA_CC_CC____
7._GU_136_/H
_____AA_CC_CC____
8._GU_136_/H
_____AA_CC_CC____
9._GU_136_/H
_____AA_CC_CC____
10._GU_136_/H
_____AA_CC_CC____
11._GU_136_/H
_____AA_CC_CC____
12._GU_136_/H
_____AA_CC_CC____
13._GU_136_/H
_____AA_CC_CC____
14._GU_136_/H
_____AA_CC_CC____
15._GU_136_/H
_____AA_CC_CC____
16._GU_136_/H
_____AA_CC_CC____
17._GU_136_/H
_____AA_CC_CC____
18._GC-03-019-2-08
GG____AA_CC_CCCC___
19._GC-03-019-2-08
GG____AA_CC_CCCC___
20._GC-03-019-2-08
GG____AA_CC_CCCC___
21._GC-03-019-2-08
GG____AA_CC_CCCC___
22._GC-03-019-2-08
GG____AA_CC_CCCC___
23._GC-03-019-2-08
GG____AA_CC_CCCC___
24._GC-03-019-2-08
GG____AA_CC_CCCC___
25._GC-03-019-2-08
GG____AA_CC_CCCC___
26._GC-03-019-2-08
GG____AA_CC_CCCC___
27._GC-03-019-2-08
GG____AA_CC_CCCC___
28._GC-03-019-2-08
GG____AA_CC_CCCC___
29._GC-03-019-2-08
GG____AA_CC_CCCC___
30._GC-03-019-2-08
GG____AA_CC_CCCC___
31._GC-03-019-2-08
GG____AA_CC_CCCC___
32._GC-03-019-2-08
GG____AA_CC_CCCC___
33._GC-03-19-2-8
GG____AA_CC_CCGG___
 2930313233343536373839404142
_Input profile
AACCCCGGAATTTTAAAACCGGGGCCAA
1._RUQ_221
__CCGGAA__AA__GG-_AA
2._RUQ_221
AA__GG______GG__AA
3._GU_136_/H
GG__GG______GG__AA
4._GU_136_/H
GG__GG______GG__AA
5._GU_136_/H
GG__GG______GG__AA
6._GU_136_/H
GG__GG______GG__AA
7._GU_136_/H
GG__GG______GG__AA
8._GU_136_/H
GG__GG______GG__AA
9._GU_136_/H
GG__GG______GG__AA
10._GU_136_/H
GG__GG______GG__AA
11._GU_136_/H
GG__GG______GG__AA
12._GU_136_/H
GG__GG______GG__AA
13._GU_136_/H
GG__GG______GG__AA
14._GU_136_/H
GG__GG______GG__AA
15._GU_136_/H
GG__GG______GG__AA
16._GU_136_/H
GG__GG______GG__AA
17._GU_136_/H
GG__GG______GG__AA
18._GC-03-019-2-08
GG__GGAA__AA_GGGGGG_AA
19._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
20._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
21._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
22._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
23._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
24._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
25._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
26._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
27._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
28._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
29._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
30._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
31._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
32._GC-03-019-2-08
GG_CTGGAA__AA_GGGGGG_AA
33._GC-03-19-2-8
___CCAA__AA_CCCCGG_AA
 4344454647484950515253545556
_Input profile
CCTTAACCGGTTCCGGAATTGGTTAAGG
1._RUQ_221
CC________TT____
2._RUQ_221
____GG_CC__TT____
3._GU_136_/H
____GG_CC__TT____
4._GU_136_/H
____GG_CC__TT____
5._GU_136_/H
____GG_CC__TT____
6._GU_136_/H
____GG_CC__TT____
7._GU_136_/H
____GG_CC__TT____
8._GU_136_/H
____GG_CC__TT____
9._GU_136_/H
____GG_CC__TT____
10._GU_136_/H
____GG_CC__TT____
11._GU_136_/H
____GG_CC__TT____
12._GU_136_/H
____GG_CC__TT____
13._GU_136_/H
____GG_CC__TT____
14._GU_136_/H
____GG_CC__TT____
15._GU_136_/H
____GG_CC__TT____
16._GU_136_/H
____GG_CC__TT____
17._GU_136_/H
____GG_CC_______
18._GC-03-019-2-08
CC___GG_CC__TT____
19._GC-03-019-2-08
CC___GG_CC__TT____
20._GC-03-019-2-08
CC___GG_CC__TT____
21._GC-03-019-2-08
CC___GG_CC__TT____
22._GC-03-019-2-08
CC___GG_CC__TT____
23._GC-03-019-2-08
CC___GG_CC__TT____
24._GC-03-019-2-08
CC___GG_CC__TT____
25._GC-03-019-2-08
CC___GG_CC__TT____
26._GC-03-019-2-08
CC___GG_CC__TT____
27._GC-03-019-2-08
CC___GG_CC__TT____
28._GC-03-019-2-08
CC___GG_CC__TT____
29._GC-03-019-2-08
CC___GG_CC__TT____
30._GC-03-019-2-08
CC___GG_CC__TT____
31._GC-03-019-2-08
CC___GG_CC__TT____
32._GC-03-019-2-08
CC___GG_CC_______
33._GC-03-19-2-8
____GG____AA____
 575859           
_Input profile
GGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_221
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_221
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_136_/H
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-019-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-19-2-8
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_136_/H RUQ_221

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_136_/H RUQ_221

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_136_/H RUQ_221

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

5._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

6._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

7._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

8._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

9._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

11._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

12._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

13._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

14._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

15._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

16._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

91.7 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

18._GU_136_/H GC-03-019-2-08

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

19._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._GU_136_/H GC-03-19-2-8

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527